Structural Similarities for the Entities in PDB 1IHF

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C

Description: DNA (35-MER) dna | Length: 35

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains D

Description: DNA (5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3') dna | Length: 15

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains E

Description: DNA (5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP*C P*AP*CP*C)-3') dna | Length: 20

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains A

Description: PROTEIN (INTEGRATION HOST FACTOR (ALPHA) (IHF)) protein | Length: 99

No structure alignment results are available for 1IHF.A explicitly.

It is represented by chain 4P3V.A which has more than 40% sequence identity.

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View how chain 1IHF.A compares with the representative chain PDP:4P3VAa. Select a comparison method:


Entity #5 | Chains B

Description: PROTEIN (INTEGRATION HOST FACTOR (BETA) (IHF)) protein | Length: 94

No structure alignment results are available for 1IHF.B explicitly.

It is represented by chain 4P3V.A which has more than 40% sequence identity.

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View how chain 1IHF.B compares with the representative chain PDP:4P3VAa. Select a comparison method:


References