Structural Similarities for the Entities in PDB 1IFH

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains L

Description: IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein | Length: 218

No structure alignment results are available for 1IFH.L explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 1IFH.L compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #2 | Chains H

Description: IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein | Length: 220

No structure alignment results are available for 1IFH.H explicitly.

It is represented by chain 4NZU.L which has more than 50% sequence identity.

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View how chain 1IFH.H compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains P

Description: INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 101-107) protein | Length: 8

This entity is too short to be considered for the all vs. all structure alignments.


References