Structural Similarities for the Entities in PDB 1I9R

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C

Description: CD40 LIGAND protein | Length: 146

No structure alignment results are available for 1I9R.A, 1I9R.B, 1I9R.C explicitly.

These chains are represented by chain 1ALY.a which is 100% sequence identical.

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View how chain 1I9R.C compares with the representative chain d1alya_. Select a comparison method:


Entity #2 | Chains H,K,X

Description: IMMUNOGLOBULIN H protein | Length: 219

No structure alignment results are available for 1I9R.H, 1I9R.K, 1I9R.X explicitly.

These chains are represented by chain 4NZU.L which has more than 50% sequence identity.

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View how chain 1I9R.X compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains L,M,Y

Description: IMMUNOGLOBULIN L protein | Length: 218

No structure alignment results are available for 1I9R.L, 1I9R.M, 1I9R.Y explicitly.

These chains are represented by chain 4NZU.L which has more than 90% sequence identity.

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View how chain 1I9R.Y compares with the representative chain PDP:4NZULa. Select a comparison method:


References