Structural Similarities for the Entities in PDB 1I3Q

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-24-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein | Length: 1733

No structure alignment results are available for 1I3Q.A explicitly.

It is represented by chain 1TWF.a which is 100% sequence identical.

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View how chain 1I3Q.A compares with the representative chain d1twfa_. Select a comparison method:


Entity #10 | Chains L

Description: DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein | Length: 70

No structure alignment results are available for 1I3Q.L explicitly.

It is represented by chain 4C2M.1 which is 100% sequence identical.

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Entity #2 | Chains B

Description: DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein | Length: 1224

No structure alignment results are available for 1I3Q.B explicitly.

It is represented by chain 1TWF.b which is 100% sequence identical.

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Entity #3 | Chains C

Description: DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein | Length: 318

No structure alignment results are available for 1I3Q.C explicitly.

It is represented by chain 1TWF.c which is 100% sequence identical.

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Entity #4 | Chains E

Description: DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein | Length: 215

No structure alignment results are available for 1I3Q.E explicitly.

It is represented by chain 1DZF.a which is 100% sequence identical.

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Entity #5 | Chains F

Description: DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein | Length: 155

No structure alignment results are available for 1I3Q.F explicitly.

It is represented by chain 4C2M.F which is 100% sequence identical.

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Entity #6 | Chains H

Description: DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein | Length: 146

No structure alignment results are available for 1I3Q.H explicitly.

It is represented by chain 4C2M.H which is 100% sequence identical.

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Entity #7 | Chains I

Description: DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein | Length: 122

No structure alignment results are available for 1I3Q.I explicitly.

It is represented by chain 1TWF.i which is 100% sequence identical.

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Entity #8 | Chains J

Description: DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein | Length: 70

No structure alignment results are available for 1I3Q.J explicitly.

It is represented by chain 4C2M.J which is 100% sequence identical.

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Entity #9 | Chains K

Description: DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein | Length: 120

No structure alignment results are available for 1I3Q.K explicitly.

It is represented by chain 1TWF.k which is 100% sequence identical.

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References