Structural Similarities for the Entities in PDB 1HVU

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jan-10-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C,F,I,L

Description: RNA (33 NUCLEOTIDE RNA PSEUDOKNOT) rna | Length: 30

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains A,D,G,J

Description: PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein | Length: 554

No structure alignment results are available for 1HVU.A, 1HVU.D, 1HVU.G, 1HVU.J explicitly.

These chains are represented by chain 4G1Q.A which has more than 95% sequence identity.

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View how chain 1HVU.J compares with the representative chain PDP:4G1QAa. Select a comparison method:


Entity #3 | Chains B,E,H,K

Description: PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein | Length: 423

No structure alignment results are available for 1HVU.B, 1HVU.E, 1HVU.H, 1HVU.K explicitly.

These chains are represented by chain 4G1Q.B which has more than 95% sequence identity.

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View how chain 1HVU.K compares with the representative chain PDP:4G1QBa. Select a comparison method:


References