Structural Similarities for the Entities in PDB 1HR9

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G

Description: MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT protein | Length: 475

No structure alignment results are available for 1HR9.A, 1HR9.C, 1HR9.E, 1HR9.G explicitly.

These chains are represented by chain 1HR6.a which is 100% sequence identical.

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View how chain 1HR9.G compares with the representative chain d1hr6a1. Select a comparison method:


Entity #2 | Chains B,D,F,H

Description: MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT protein | Length: 443

No structure alignment results are available for 1HR9.B, 1HR9.D, 1HR9.F, 1HR9.H explicitly.

These chains are represented by chain 1HR6.b which has more than 95% sequence identity.

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View how chain 1HR9.H compares with the representative chain d1hr6b1. Select a comparison method:


Entity #3 | Chains O,P,Q,R

Description: MALATE DEHYDROGENASE protein | Length: 8

This entity is too short to be considered for the all vs. all structure alignments.


References