Structural Similarities for the Entities in PDB 1HQR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: HLA-DR ALPHA CHAIN protein | Length: 181

No structure alignment results are available for 1HQR.A explicitly.

It is represented by chain 4X5W.A which is 100% sequence identical.

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View how chain 1HQR.A compares with the representative chain PDP:4X5WAa. Select a comparison method:


Entity #2 | Chains B

Description: HLA-DR BETA CHAIN protein | Length: 190

No structure alignment results are available for 1HQR.B explicitly.

It is represented by chain 4X5W.B which has more than 90% sequence identity.

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View how chain 1HQR.B compares with the representative chain PDP:4X5WBa. Select a comparison method:


Entity #3 | Chains C

Description: MYELIN BASIC PROTEIN protein | Length: 13

This entity is too short to be considered for the all vs. all structure alignments.


Entity #4 | Chains D

Description: STREPTOCOCCAL PYROGENIC EXOTOXIN C protein | Length: 208

No structure alignment results are available for 1HQR.D explicitly.

It is represented by chain 1TY0.a which has more than 40% sequence identity.

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View how chain 1HQR.D compares with the representative chain d1ty0a1. Select a comparison method:


References