Structural Similarities for the Entities in PDB 1HQ3

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,E

Description: HISTONE H2A-IV protein | Length: 129

No structure alignment results are available for 1HQ3.A, 1HQ3.E explicitly.

These chains are represented by chain 4CAY.A which has more than 50% sequence identity.

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View how chain 1HQ3.E compares with the representative chain PDP:4CAYAa. Select a comparison method:


Entity #2 | Chains B,F

Description: HISTONE H2B protein | Length: 126

No structure alignment results are available for 1HQ3.B, 1HQ3.F explicitly.

These chains are represented by chain 1TZY.b which is 100% sequence identical.

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View how chain 1HQ3.F compares with the representative chain d1tzyb_. Select a comparison method:


Entity #3 | Chains C,G

Description: HISTONE H3 protein | Length: 136

No structure alignment results are available for 1HQ3.C, 1HQ3.G explicitly.

These chains are represented by chain 1TZY.c which is 100% sequence identical.

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View how chain 1HQ3.G compares with the representative chain d1tzyc_. Select a comparison method:


Entity #4 | Chains D,H

Description: HISTONE H4-VI protein | Length: 103

No structure alignment results are available for 1HQ3.D, 1HQ3.H explicitly.

These chains are represented by chain 1TZY.d which is 100% sequence identical.

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View how chain 1HQ3.H compares with the representative chain d1tzyd_. Select a comparison method:


References