Structural Similarities for the Entities in PDB 1HJB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,D,E

Description: CCAAT/ENHANCER BINDING PROTEIN BETA protein | Length: 87

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Entity #2 | Chains C,F

Description: RUNT-RELATED TRANSCRIPTION FACTOR 1 protein | Length: 123

No structure alignment results are available for 1HJB.C, 1HJB.F explicitly.

These chains are represented by chain 1EAQ.a which has more than 95% sequence identity.

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View how chain 1HJB.F compares with the representative chain d1eaqa_. Select a comparison method:


Entity #3 | Chains G,I

Description: DNA (5'-(*GP*AP*AP*GP*AP*TP*TP*TP*CP*CP* AP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP*TP*TP*GP*CP*G)-3') dna | Length: 26

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains H,J

Description: DNA (5'-(*CP*CP*GP*CP*AP*AP*CP*CP*AP*CP* AP*GP*AP*GP*TP*TP*TP*GP*GP*AP*AP*AP*TP*CP*TP*T)-3') dna | Length: 26

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References