Structural Similarities for the Entities in PDB 1HIM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains H,J

Description: IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein | Length: 217

No structure alignment results are available for 1HIM.H, 1HIM.J explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1HIM.J compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #2 | Chains L,M

Description: IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein | Length: 220

No structure alignment results are available for 1HIM.L, 1HIM.M explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1HIM.M compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains P

Description: INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 100-108) protein | Length: 9

This entity is too short to be considered for the all vs. all structure alignments.


Entity #4 | Chains R

Description: INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 100-108) protein | Length: 10

This entity is too short to be considered for the all vs. all structure alignments.


References