Structural Similarities for the Entities in PDB 1HDB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: HEMOGLOBIN (DEOXY) BETA-V67T protein | Length: 141

No structure alignment results are available for 1HDB.A, 1HDB.C explicitly.

These chains are represented by chain 2W72.A which has more than 95% sequence identity.

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View how chain 1HDB.C compares with the representative chain PDP:2W72Aa. Select a comparison method:


Entity #2 | Chains B,D

Description: HEMOGLOBIN (DEOXY) BETA-V67T protein | Length: 146

No structure alignment results are available for 1HDB.B, 1HDB.D explicitly.

These chains are represented by chain 2W72.A which has more than 50% sequence identity.

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View how chain 1HDB.D compares with the representative chain PDP:2W72Aa. Select a comparison method:


References