Structural Similarities for the Entities in PDB 1HCF

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B

Description: NEUROTROPHIN-4 protein | Length: 130

No structure alignment results are available for 1HCF.A, 1HCF.B explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains X,Y

Description: BDNF/NT-3 GROWTH FACTORS RECEPTOR protein | Length: 101

No structure alignment results are available for 1HCF.X, 1HCF.Y explicitly.

These chains are represented by chain 1WWW.x which has more than 40% sequence identity.

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References