Structural Similarities for the Entities in PDB 1HBX

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-14-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,D,E

Description: SERUM RESPONSE FACTOR protein | Length: 92

No structure alignment results are available for 1HBX.A, 1HBX.B, 1HBX.D, 1HBX.E explicitly.

These chains are represented by chain 1SRS.a which is 100% sequence identical.

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View how chain 1HBX.E compares with the representative chain d1srsa_. Select a comparison method:


Entity #2 | Chains C,F

Description: 5'-D(*GP*AP*TP*GP*GP*CP*CP*TP*AP*AP*TP*TP*AP* GP*GP*AP*CP*TP*TP*CP*CP*GP*GP*TP*G)-3' dna | Length: 26

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains G,H

Description: ETS-DOMAIN PROTEIN ELK-4 protein | Length: 157

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Entity #4 | Chains W,X

Description: 5'-D(*CP*AP*CP*AP*CP*CP*GP*GP*AP*AP*GP*TP*CP* CP*TP*AP*AP*TP*TP*AP*GP*GP*CP*CP*AP*T)-3' dna | Length: 26

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References