Structural Similarities for the Entities in PDB 1HBO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT protein | Length: 549

No structure alignment results are available for 1HBO.A, 1HBO.D explicitly.

These chains are represented by chain 5A0Y.A which has more than 95% sequence identity.

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View how chain 1HBO.D compares with the representative chain PDP:5A0YAa. Select a comparison method:


Entity #2 | Chains B,E

Description: METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein | Length: 442

No structure alignment results are available for 1HBO.B, 1HBO.E explicitly.

These chains are represented by chain 5A0Y.B which is 100% sequence identical.

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View how chain 1HBO.E compares with the representative chain PDP:5A0YBa. Select a comparison method:


Entity #3 | Chains C,F

Description: METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT protein | Length: 248

No structure alignment results are available for 1HBO.C, 1HBO.F explicitly.

These chains are represented by chain 5A0Y.C which is 100% sequence identical.

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View how chain 1HBO.F compares with the representative chain PDP:5A0YCa. Select a comparison method:


References