Structural Similarities for the Entities in PDB 1H9D

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: CORE-BINDING FACTOR ALPHA SUBUNIT1 protein | Length: 134

No structure alignment results are available for 1H9D.A, 1H9D.C explicitly.

These chains are represented by chain 1EAQ.a which has more than 95% sequence identity.

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View how chain 1H9D.C compares with the representative chain d1eaqa_. Select a comparison method:


Entity #2 | Chains B,D

Description: CORE-BINDING FACTOR CBF-BETA protein | Length: 134

No structure alignment results are available for 1H9D.B, 1H9D.D explicitly.

These chains are represented by chain 3WTT.B which has more than 95% sequence identity.

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View how chain 1H9D.D compares with the representative chain PDP:3WTTBa. Select a comparison method:


Entity #3 | Chains E,G

Description: DNA (5'-(*GP*TP*TP*GP*CP*GP*GP*TP*TP*G)-3') dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains F,H

Description: DNA (5'-(*CP*AP*AP*CP*CP*GP*CP*AP*AP*C)-3') dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References