Structural Similarities for the Entities in PDB 1H38

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: DNA-DIRECTED RNA POLYMERASE protein | Length: 883

No structure alignment results are available for 1H38.A, 1H38.B, 1H38.C, 1H38.D explicitly.

These chains are represented by chain 1MSW.d which is 100% sequence identical.

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View how chain 1H38.D compares with the representative chain d1mswd_. Select a comparison method:


Entity #2 | Chains E,H,K,N

Description: 5'-D(*GP*GP*GP*AP*AP*TP*CP*GP*AP*CP *AP*TP*CP*GP*CP*CP*GP*C)-3' dna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains F,I,L,O

Description: 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3' rna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains G,J,M,P

Description: 5'-D(*GP*TP*CP*GP*AP*TP*TP*CP*CP*CP)-3' dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References