Structural Similarities for the Entities in PDB 1H2S

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: SENSORY RHODOPSIN II protein | Length: 225

No structure alignment results are available for 1H2S.A explicitly.

It is represented by chain 3QAP.A which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1H2S.A compares with the representative chain PDP:3QAPAa. Select a comparison method:


Entity #2 | Chains B

Description: SENSORY RHODOPSIN II TRANSDUCER protein | Length: 60

  Loading...

References