Structural Similarities for the Entities in PDB 1GXP

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,E,F

Description: PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN protein | Length: 106

No structure alignment results are available for 1GXP.A, 1GXP.B, 1GXP.E, 1GXP.F explicitly.

These chains are represented by chain 1GXQ.a which is 100% sequence identical.

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View how chain 1GXP.F compares with the representative chain d1gxqa_. Select a comparison method:


Entity #2 | Chains C,G

Description: 5'-D(*GP*AP*GP*CP*TP*GP*TP*CP*AP*TP* AP*AP*AP*GP*TP*TP*GP*TP*CP*AP*CP*GP*G)-3' dna | Length: 23

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains D,H

Description: 5'-D(*CP*CP*CP*GP*TP*GP*AP*CP*AP*AP* CP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*T)-3' dna | Length: 23

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References