Structural Similarities for the Entities in PDB 1GU4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: CAAT/ENHANCER BINDING PROTEIN BETA protein | Length: 78

No structure alignment results are available for 1GU4.A, 1GU4.B explicitly.

These chains are represented by chain 2E42.a which has more than 95% sequence identity.

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View how chain 1GU4.B compares with the representative chain d2e42a1. Select a comparison method:


Entity #2 | Chains C

Description: 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*AP*AP*TP*AP*T)-3' dna | Length: 16

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains D

Description: 5'-D(*AP*AP*TP*AP*TP*TP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3' dna | Length: 16

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References