Structural Similarities for the Entities in PDB 1GTF

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V

Description: TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) protein | Length: 74

No structure alignment results are available for 1GTF.A, 1GTF.B, 1GTF.C, 1GTF.D, 1GTF.E, 1GTF.F, 1GTF.G, 1GTF.H, 1GTF.I, 1GTF.J, 1GTF.K, 1GTF.L, 1GTF.M, 1GTF.N, 1GTF.O, 1GTF.P, 1GTF.Q, 1GTF.R, 1GTF.S, 1GTF.T, 1GTF.U, 1GTF.V explicitly.

These chains are represented by chain 3ZZS.A which has more than 70% sequence identity.

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View how chain 1GTF.V compares with the representative chain PDP:3ZZSAa. Select a comparison method:

Entity #2 | Chains W

Description: (GAGUU)10GAG 53-NUCLEOTIDE RNA rna | Length: 55

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.