Structural Similarities for the Entities in PDB 1GT0

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3' dna | Length: 24

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains B

Description: 5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' dna | Length: 24

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C

Description: OCTAMER-BINDING TRANSCRIPTION FACTOR 1 protein | Length: 159

No structure alignment results are available for 1GT0.C explicitly.

It is represented by chain 1E3O.c which has more than 95% sequence identity.

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View how chain 1GT0.C compares with the representative chain d1e3oc1. Select a comparison method:


Entity #4 | Chains D

Description: TRANSCRIPTION FACTOR SOX-2 protein | Length: 80

No structure alignment results are available for 1GT0.D explicitly.

It is represented by chain 4Y60.C which has more than 50% sequence identity.

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View how chain 1GT0.D compares with the representative chain PDP:4Y60Ca. Select a comparison method:


References