The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment  is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser .
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Nov-17-2015
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A detailed description of the procedure for the all vs. all alignments is available.
Description: 5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3' dna |
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Description: 5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3' dna |
Description: OCTAMER-BINDING TRANSCRIPTION FACTOR 1 protein |
represented by chain 1E3O.C
which has more than 95% sequence identity.
View how chain 1GT0.C compares with the representative chain d1e3oc1. Select a comparison method:
Description: TRANSCRIPTION FACTOR SOX-2 protein |
represented by chain 4A3N.A
which has more than 50% sequence identity.
View how chain 1GT0.D compares with the representative chain PDP:4A3NAa. Select a comparison method:
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
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The RCSB PDB is funded by a grant (DBI-1338415) from the
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