Structural Similarities for the Entities in PDB 1GPW

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E

Description: HISF PROTEIN protein | Length: 253

No structure alignment results are available for 1GPW.A, 1GPW.C, 1GPW.E explicitly.

These chains are represented by chain 3TDN.A which has more than 50% sequence identity.

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View how chain 1GPW.E compares with the representative chain PDP:3TDNAa. Select a comparison method:


Entity #2 | Chains B,D,F

Description: AMIDOTRANSFERASE HISH protein | Length: 201

No structure alignment results are available for 1GPW.B, 1GPW.D, 1GPW.F explicitly.

These chains are represented by chain 3ZR4.B which is 100% sequence identical.

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View how chain 1GPW.F compares with the representative chain PDP:3ZR4Ba. Select a comparison method:


References