Structural Similarities for the Entities in PDB 1GK8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-14-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G

Description: RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN protein | Length: 475

No structure alignment results are available for 1GK8.A, 1GK8.C, 1GK8.E, 1GK8.G explicitly.

These chains are represented by chain 1WDD.a which has more than 90% sequence identity.

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View how chain 1GK8.G compares with the representative chain d1wdda1. Select a comparison method:


Entity #2 | Chains I,K,M,O

Description: RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 protein | Length: 140

No structure alignment results are available for 1GK8.I, 1GK8.K, 1GK8.M, 1GK8.O explicitly.

These chains are represented by chain 1WDD.s which has more than 50% sequence identity.

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View how chain 1GK8.O compares with the representative chain d1wdds_. Select a comparison method:


References