Structural Similarities for the Entities in PDB 1GHQ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: COMPLEMENT C3 protein | Length: 308

No structure alignment results are available for 1GHQ.A explicitly.

It is represented by chain 1QQF.A which has more than 70% sequence identity.

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View how chain 1GHQ.A compares with the representative chain d1qqfa_. Select a comparison method:


Entity #2 | Chains B,C

Description: CR2/CD121/C3D/EPSTEIN-BARR VIRUS RECEPTOR protein | Length: 134

No structure alignment results are available for 1GHQ.B, 1GHQ.C explicitly.

These chains are represented by chain 1LY2.A which has more than 95% sequence identity.

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References