Structural Similarities for the Entities in PDB 1GH0

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G,I,K,M,O,Q,S,U,W

Description: C-PHYCOCYANIN ALPHA SUBUNIT protein | Length: 162

No structure alignment results are available for 1GH0.A, 1GH0.C, 1GH0.E, 1GH0.G, 1GH0.I, 1GH0.K, 1GH0.M, 1GH0.O, 1GH0.Q, 1GH0.S, 1GH0.U, 1GH0.W explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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View how chain 1GH0.W compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains B,D,F,H,J,L,N,P,R,T,V,X

Description: C-PHYCOCYANIN BETA SUBUNIT protein | Length: 172

No structure alignment results are available for 1GH0.B, 1GH0.D, 1GH0.F, 1GH0.H, 1GH0.J, 1GH0.L, 1GH0.N, 1GH0.P, 1GH0.R, 1GH0.T, 1GH0.V, 1GH0.X explicitly.

These chains are represented by chain 1XG0.c which has more than 50% sequence identity.

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View how chain 1GH0.X compares with the representative chain d1xg0c_. Select a comparison method:


References