Structural Similarities for the Entities in PDB 1GG4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE-D-ALANYL-D-ALANYL LIGASE protein | Length: 452

No structure alignment results are available for 1GG4.A, 1GG4.B explicitly.

These chains are represented by chain 4ZIY.A which has more than 40% sequence identity.

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View how chain 1GG4.B compares with the representative chain PDP:4ZIYAa. Select a comparison method:


References