Structural Similarities for the Entities in PDB 1GD8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-28-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H,I

Description: 50S RIBOSOMAL PROTEIN L17 protein | Length: 118

No structure alignment results are available for 1GD8.A, 1GD8.B, 1GD8.C, 1GD8.D, 1GD8.E, 1GD8.F, 1GD8.G, 1GD8.H, 1GD8.I explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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View how chain 1GD8.I compares with the representative chain xxxx. Select a comparison method: