Structural Similarities for the Entities in PDB 1G4B

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains E,F,K,L

Description: ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU protein | Length: 443

No structure alignment results are available for 1G4B.E, 1G4B.F, 1G4B.K, 1G4B.L explicitly.

These chains are represented by chain 1G41.a which has more than 70% sequence identity.

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View how chain 1G4B.L compares with the representative chain d1g41a_. Select a comparison method:


Entity #2 | Chains M,N,O,P

Description: ATP-DEPENDENT PROTEASE HSLV protein | Length: 175

No structure alignment results are available for 1G4B.M, 1G4B.N, 1G4B.O, 1G4B.P explicitly.

These chains are represented by chain 1G3K.a which has more than 70% sequence identity.

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View how chain 1G4B.P compares with the representative chain d1g3ka_. Select a comparison method:


References