Structural Similarities for the Entities in PDB 1G1X

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Dec-31-1969

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains D,I

Description: 16S RIBOSOMAL RNA rna | Length: 41

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains E,J

Description: 16S RIBOSOMAL RNA rna | Length: 44

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A,F

Description: 30S RIBOSOMAL PROTEIN S6 protein | Length: 98

No structure alignment results are available for 1G1X.A, 1G1X.F explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #4 | Chains B,G

Description: 30S RIBOSOMAL PROTEIN S15 protein | Length: 88

No structure alignment results are available for 1G1X.B, 1G1X.G explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains C,H

Description: 30S RIBOSOMAL PROTEIN S18 protein | Length: 88

No structure alignment results are available for 1G1X.C, 1G1X.H explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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References