Structural Similarities for the Entities in PDB 1FZ4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN protein | Length: 527

No structure alignment results are available for 1FZ4.A, 1FZ4.B explicitly.

These chains are represented by chain 1MTY.d which has more than 95% sequence identity.

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View how chain 1FZ4.B compares with the representative chain d1mtyd_. Select a comparison method:


Entity #2 | Chains C,D

Description: METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN protein | Length: 389

No structure alignment results are available for 1FZ4.C, 1FZ4.D explicitly.

These chains are represented by chain 1MTY.b which is 100% sequence identical.

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View how chain 1FZ4.D compares with the representative chain d1mtyb_. Select a comparison method:


Entity #3 | Chains E,F

Description: METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN protein | Length: 170

No structure alignment results are available for 1FZ4.E, 1FZ4.F explicitly.

These chains are represented by chain 1MTY.g which has more than 95% sequence identity.

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View how chain 1FZ4.F compares with the representative chain d1mtyg_. Select a comparison method:


References