Structural Similarities for the Entities in PDB 1FSK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G,J

Description: MAJOR POLLEN ALLERGEN BET V 1-A protein | Length: 159

No structure alignment results are available for 1FSK.A, 1FSK.D, 1FSK.G, 1FSK.J explicitly.

These chains are represented by chain 4A8U.A which has more than 95% sequence identity.

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View how chain 1FSK.J compares with the representative chain PDP:4A8UAa. Select a comparison method:


Entity #2 | Chains B,E,H,K

Description: IMMUNOGLOBULIN KAPPA LIGHT CHAIN protein | Length: 214

No structure alignment results are available for 1FSK.B, 1FSK.E, 1FSK.H, 1FSK.K explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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Entity #3 | Chains C,F,I,L

Description: ANTIBODY HEAVY CHAIN FAB protein | Length: 220

No structure alignment results are available for 1FSK.C, 1FSK.F, 1FSK.I, 1FSK.L explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 1FSK.L compares with the representative chain PDP:4NZULa. Select a comparison method:


References