Structural Similarities for the Entities in PDB 1FQV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G,I,K,M,O

Description: SKP2 protein | Length: 336

No structure alignment results are available for 1FQV.A, 1FQV.C, 1FQV.E, 1FQV.G, 1FQV.I, 1FQV.K, 1FQV.M, 1FQV.O explicitly.

These chains are represented by chain 2AST.b which is 100% sequence identical.

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View how chain 1FQV.O compares with the representative chain d2astb1. Select a comparison method:


Entity #2 | Chains B,D,F,H,J,L,N,P

Description: SKP1 protein | Length: 149

No structure alignment results are available for 1FQV.B, 1FQV.D, 1FQV.F, 1FQV.H, 1FQV.J, 1FQV.L, 1FQV.N, 1FQV.P explicitly.

These chains are represented by chain 2P1M.A which has more than 50% sequence identity.

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View how chain 1FQV.P compares with the representative chain PDP:2P1MAa. Select a comparison method:


References