Structural Similarities for the Entities in PDB 1FQJ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Dec-31-1969

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 protein | Length: 325

No structure alignment results are available for 1FQJ.A, 1FQJ.D explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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View how chain 1FQJ.D compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains B,E

Description: Regulator of G-protein signaling 9 protein | Length: 147

No structure alignment results are available for 1FQJ.B, 1FQJ.E explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #3 | Chains C

Description: Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma protein | Length: 42

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References