Structural Similarities for the Entities in PDB 1FOS

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: DNA (5'-D(*AP*AP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*AP*GP*GP*AP*GP*A)-3') dna | Length: 20

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains B,D

Description: DNA (5'-D(*TP*TP*CP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*AP*T)-3') dna | Length: 20

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains E,G

Description: P55-C-FOS PROTO-ONCOGENE PROTEIN protein | Length: 62

No structure alignment results are available for 1FOS.E, 1FOS.G explicitly.

These chains are represented by chain 2WT7.A which has more than 95% sequence identity.

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View how chain 1FOS.G compares with the representative chain PDP:2WT7Aa. Select a comparison method:


Entity #4 | Chains F,H

Description: C-JUN PROTO-ONCOGENE PROTEIN protein | Length: 62

No structure alignment results are available for 1FOS.F, 1FOS.H explicitly.

These chains are represented by chain 5T01.A which is 100% sequence identical.

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View how chain 1FOS.H compares with the representative chain PDP:5T01Aa. Select a comparison method:


References