Structural Similarities for the Entities in PDB 1FNT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,O

Description: PROTEASOME COMPONENT C7-ALPHA protein | Length: 252

No structure alignment results are available for 1FNT.A, 1FNT.O explicitly.

These chains are represented by chain 5LE5.G which has more than 50% sequence identity.

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Entity #10 | Chains J,X

Description: PROTEASOME COMPONENT PUP3 protein | Length: 205

No structure alignment results are available for 1FNT.J, 1FNT.X explicitly.

These chains are represented by chain 5LE5.I which has more than 50% sequence identity.

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Entity #11 | Chains K,Y

Description: PROTEASOME COMPONENT C11 protein | Length: 198

No structure alignment results are available for 1FNT.K, 1FNT.Y explicitly.

These chains are represented by chain 5LE5.J which has more than 40% sequence identity.

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Entity #12 | Chains L,Z

Description: PROTEASOME COMPONENT PRE2 protein | Length: 212

No structure alignment results are available for 1FNT.L, 1FNT.Z explicitly.

These chains are represented by chain 5LE5.K which has more than 70% sequence identity.

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Entity #13 | Chains M,a

Description: PROTEASOME COMPONENT C5 protein | Length: 222

No structure alignment results are available for 1FNT.M, 1FNT.a explicitly.

These chains are represented by chain 5LE5.L which has more than 40% sequence identity.

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Entity #14 | Chains N,b

Description: PROTEASOME COMPONENT PRE4 protein | Length: 233

No structure alignment results are available for 1FNT.N, 1FNT.b explicitly.

These chains are represented by chain 5LE5.M which has more than 40% sequence identity.

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Entity #15 | Chains c,d,e,f,g,h,i,j,k,l,m,n,o,p

Description: PROTEASOME ACTIVATOR PROTEIN PA26 protein | Length: 231

No structure alignment results are available for 1FNT.c, 1FNT.d, 1FNT.e, 1FNT.f, 1FNT.g, 1FNT.h, 1FNT.i, 1FNT.j, 1FNT.k, 1FNT.l, 1FNT.m, 1FNT.n, 1FNT.o, 1FNT.p explicitly.

These chains are represented by chain 1YAR.o which has more than 95% sequence identity.

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Entity #2 | Chains B,P

Description: PROTEASOME COMPONENT Y7 protein | Length: 250

No structure alignment results are available for 1FNT.B, 1FNT.P explicitly.

These chains are represented by chain 5LE5.A which has more than 50% sequence identity.

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Entity #3 | Chains C,Q

Description: PROTEASOME COMPONENT Y13 protein | Length: 245

No structure alignment results are available for 1FNT.C, 1FNT.Q explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #4 | Chains D,R

Description: PROTEASOME COMPONENT PRE6 protein | Length: 254

No structure alignment results are available for 1FNT.D, 1FNT.R explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #5 | Chains E,S

Description: PROTEASOME COMPONENT PUP2 protein | Length: 260

No structure alignment results are available for 1FNT.E, 1FNT.S explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #6 | Chains F,T

Description: PROTEASOME COMPONENT PRE5 protein | Length: 234

No structure alignment results are available for 1FNT.F, 1FNT.T explicitly.

These chains are represented by chain 5LE5.E which has more than 50% sequence identity.

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Entity #7 | Chains G,U

Description: PROTEASOME COMPONENT C1 protein | Length: 287

No structure alignment results are available for 1FNT.G, 1FNT.U explicitly.

These chains are represented by chain 4R17.F which is 100% sequence identical.

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Entity #8 | Chains H,V

Description: PROTEASOME COMPONENT PRE3 protein | Length: 196

No structure alignment results are available for 1FNT.H, 1FNT.V explicitly.

These chains are represented by chain 5LE5.N which has more than 50% sequence identity.

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Entity #9 | Chains I,W

Description: PROTEASOME COMPONENT PUP1 protein | Length: 232

No structure alignment results are available for 1FNT.I, 1FNT.W explicitly.

These chains are represented by chain 5LE5.H which has more than 50% sequence identity.

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View how chain 1FNT.W compares with the representative chain PDP:5LE5Ha. Select a comparison method:


References