Structural Similarities for the Entities in PDB 1FJ1

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: HYBRIDOMA ANTIBODY LA2 (LIGHT CHAIN) protein | Length: 213

No structure alignment results are available for 1FJ1.A, 1FJ1.C explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 1FJ1.C compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #2 | Chains B,D

Description: HYBRIDOMA ANTIBODY LA2 (HEAVY CHAIN) protein | Length: 213

No structure alignment results are available for 1FJ1.B, 1FJ1.D explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 1FJ1.D compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains E,F

Description: OUTER SURFACE PROTEIN A protein | Length: 257

No structure alignment results are available for 1FJ1.E, 1FJ1.F explicitly.

These chains are represented by chain 2I5V.O which has more than 90% sequence identity.

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View how chain 1FJ1.F compares with the representative chain PDP:2I5VOa. Select a comparison method:


References