Structural Similarities for the Entities in PDB 1FG2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G,J

Description: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein | Length: 281

No structure alignment results are available for 1FG2.A, 1FG2.D, 1FG2.G, 1FG2.J explicitly.

These chains are represented by chain 1K5N.a which has more than 70% sequence identity.

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View how chain 1FG2.J compares with the representative chain d1k5na1. Select a comparison method:


Entity #2 | Chains B,E,H,K

Description: BETA-2 MICROGLOBULIN protein | Length: 100

No structure alignment results are available for 1FG2.B, 1FG2.E, 1FG2.H, 1FG2.K explicitly.

These chains are represented by chain 1K5N.b which has more than 50% sequence identity.

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View how chain 1FG2.K compares with the representative chain d1k5nb_. Select a comparison method:


Entity #3 | Chains C,F,I,L

Description: LCMV PEPTIDIC EPITOPE GP33 protein | Length: 9

This entity is too short to be considered for the all vs. all structure alignments.


References