Structural Similarities for the Entities in PDB 1FFK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains 0

Description: 23S RRNA rna | Length: 2922

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains H

Description: RIBOSOMAL PROTEIN L14 protein | Length: 132

No structure alignment results are available for 1FFK.H explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains I

Description: RIBOSOMAL PROTEIN L15E protein | Length: 194

No structure alignment results are available for 1FFK.I explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #12 | Chains J

Description: RIBOSOMAL PROTEIN L15 protein | Length: 164

No structure alignment results are available for 1FFK.J explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains K

Description: RIBOSOMAL PROTEIN L18 protein | Length: 186

No structure alignment results are available for 1FFK.K explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains L

Description: RIBOSOMAL PROTEIN L18E protein | Length: 115

No structure alignment results are available for 1FFK.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains M

Description: RIBOSOMAL PROTEIN L19 protein | Length: 148

No structure alignment results are available for 1FFK.M explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #16 | Chains N

Description: RIBOSOMAL PROTEIN L21E protein | Length: 95

No structure alignment results are available for 1FFK.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains O

Description: RIBOSOMAL PROTEIN L22 protein | Length: 154

No structure alignment results are available for 1FFK.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains P

Description: RIBOSOMAL PROTEIN L23 protein | Length: 84

No structure alignment results are available for 1FFK.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains Q

Description: RIBOSOMAL PROTEIN L24 protein | Length: 119

No structure alignment results are available for 1FFK.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains 9

Description: 5S RRNA rna | Length: 122

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains R

Description: RIBOSOMAL PROTEIN L24E protein | Length: 66

No structure alignment results are available for 1FFK.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains S

Description: RIBOSOMAL PROTEIN L29 protein | Length: 70

No structure alignment results are available for 1FFK.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains T

Description: RIBOSOMAL PROTEIN L30 protein | Length: 154

No structure alignment results are available for 1FFK.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains U

Description: RIBOSOMAL PROTEIN L31E protein | Length: 91

No structure alignment results are available for 1FFK.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains V

Description: RIBOSOMAL PROTEIN L32E protein | Length: 143

No structure alignment results are available for 1FFK.V explicitly.

It is represented by chain 3G6E.Y which has more than 95% sequence identity.

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Entity #25 | Chains W

Description: RIBOSOMAL PROTEIN L37AE protein | Length: 73

No structure alignment results are available for 1FFK.W explicitly.

It is represented by chain 1S72.z which has more than 50% sequence identity.

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Entity #26 | Chains X

Description: RIBOSOMAL PROTEIN L37E protein | Length: 56

No structure alignment results are available for 1FFK.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains Y

Description: RIBOSOMAL PROTEIN L39E protein | Length: 49

No structure alignment results are available for 1FFK.Y explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #28 | Chains Z

Description: RIBOSOMAL PROTEIN L44E protein | Length: 92

No structure alignment results are available for 1FFK.Z explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains 1

Description: RIBOSOMAL PROTEIN L6 protein | Length: 177

No structure alignment results are available for 1FFK.1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains A

Description: RIBOSOMAL PROTEIN L2 protein | Length: 239

No structure alignment results are available for 1FFK.A explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #4 | Chains B

Description: RIBOSOMAL PROTEIN L3 protein | Length: 337

No structure alignment results are available for 1FFK.B explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #5 | Chains C

Description: RIBOSOMAL PROTEIN L4 protein | Length: 246

No structure alignment results are available for 1FFK.C explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #6 | Chains D

Description: RIBOSOMAL PROTEIN L5 protein | Length: 176

No structure alignment results are available for 1FFK.D explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains E

Description: RIBOSOMAL PROTEIN L7AE protein | Length: 119

No structure alignment results are available for 1FFK.E explicitly.

It is represented by chain 1XBI.a which has more than 50% sequence identity.

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Entity #8 | Chains F

Description: RIBOSOMAL PROTEIN L10E protein | Length: 157

No structure alignment results are available for 1FFK.F explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #9 | Chains G

Description: RIBOSOMAL PROTEIN L13 protein | Length: 145

No structure alignment results are available for 1FFK.G explicitly.

It is represented by chain 1J3A.a which has more than 40% sequence identity.

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References