Structural Similarities for the Entities in PDB 1FAK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains L

Description: PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein | Length: 152

No structure alignment results are available for 1FAK.L explicitly.

It is represented by chain 4YLQ.L which is 100% sequence identical.

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View how chain 1FAK.L compares with the representative chain PDP:4YLQLa. Select a comparison method:


Entity #2 | Chains H

Description: PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein | Length: 254

No structure alignment results are available for 1FAK.H explicitly.

It is represented by chain 4I8H.A which has more than 40% sequence identity.

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Entity #3 | Chains T

Description: PROTEIN (SOLUBLE TISSUE FACTOR) protein | Length: 206

No structure alignment results are available for 1FAK.T explicitly.

It is represented by chain 4YLQ.T which is 100% sequence identical.

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Entity #4 | Chains I

Description: PROTEIN (5L15) protein | Length: 55

No structure alignment results are available for 1FAK.I explicitly.

It is represented by chain 1G6X.a which has more than 70% sequence identity.

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References