Structural Similarities for the Entities in PDB 1F9E

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G,I,K

Description: CASPASE-8 ALPHA CHAIN protein | Length: 153

No structure alignment results are available for 1F9E.A, 1F9E.C, 1F9E.E, 1F9E.G, 1F9E.I, 1F9E.K explicitly.

These chains are represented by chain 2DKO.A which has more than 40% sequence identity.

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View how chain 1F9E.K compares with the representative chain PDP:2DKOAa. Select a comparison method:


Entity #2 | Chains B,D,F,H,J,L

Description: CASPASE-8 BETA CHAIN protein | Length: 89

No structure alignment results are available for 1F9E.B, 1F9E.D, 1F9E.F, 1F9E.H, 1F9E.J, 1F9E.L explicitly.

These chains are represented by chain 1QTN.. which is 100% sequence identical.

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