Structural Similarities for the Entities in PDB 1F6M

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,E,F

Description: THIOREDOXIN REDUCTASE protein | Length: 320

No structure alignment results are available for 1F6M.A, 1F6M.B, 1F6M.E, 1F6M.F explicitly.

These chains are represented by chain 4UP3.A which has more than 50% sequence identity.

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View how chain 1F6M.F compares with the representative chain PDP:4UP3Aa. Select a comparison method:


Entity #2 | Chains C,D,G,H

Description: THIOREDOXIN 1 protein | Length: 108

No structure alignment results are available for 1F6M.C, 1F6M.D, 1F6M.G, 1F6M.H explicitly.

These chains are represented by chain 4OO4.A which has more than 50% sequence identity.

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View how chain 1F6M.H compares with the representative chain PDP:4OO4Aa. Select a comparison method:


References