The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment  is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser .
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Feb-02-2016
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
Description: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein |
These chains are
represented by chain 4MD5.A
which has more than 50% sequence identity.
View how chain 1F3J.D compares with the representative chain PDP:4MD5Aa. Select a comparison method:
Description: MHC CLASS II NOD protein |
These chains are
represented by chain 4MD5.B
which has more than 70% sequence identity.
View how chain 1F3J.E compares with the representative chain PDP:4MD5Ba. Select a comparison method:
Description: LYSOZYME C protein |
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.