Structural Similarities for the Entities in PDB 1F3D

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-14-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains J,L

Description: CATALYTIC ANTIBODY 4B2 protein | Length: 219

No structure alignment results are available for 1F3D.J, 1F3D.L explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 1F3D.L compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #2 | Chains H,K

Description: CATALYTIC ANTIBODY 4B2 protein | Length: 217

No structure alignment results are available for 1F3D.H, 1F3D.K explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 1F3D.K compares with the representative chain PDP:4NZULa. Select a comparison method:


References