Structural Similarities for the Entities in PDB 1EG0

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains I

Description: FRAGMENT OF 16S RRNA HELIX 23 rna | Length: 33

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains F

Description: PROTEIN (S15 RIBOSOMAL PROTEIN) protein | Length: 89

No structure alignment results are available for 1EG0.F explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #11 | Chains G

Description: PROTEIN (S17 RIBOSOMAL PROTEIN) protein | Length: 93

No structure alignment results are available for 1EG0.G explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains H

Description: PROTEIN (S20 RIBOSOMAL PROTEIN) protein | Length: 100

Entity #13 | Chains N

Description: PROTEIN (RIBOSOMAL PROTEIN L1) protein | Length: 229

No structure alignment results are available for 1EG0.N explicitly.

It is represented by chain 4REO.A which has more than 95% sequence identity.

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Entity #14 | Chains J

Description: PROTEIN (RIBOSOMAL PROTEIN L6) protein | Length: 171

No structure alignment results are available for 1EG0.J explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #15 | Chains K

Description: PROTEIN (RIBOSOMAL PROTEIN L11) protein | Length: 140

No structure alignment results are available for 1EG0.K explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

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Entity #2 | Chains L

Description: FRAGMENT OF 23S RRNA rna | Length: 57

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains M

Description: HELIX 95 OF 23S RRNA rna | Length: 26

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains O

Description: FORMYL-METHIONYL-TRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains A

Description: PROTEIN (S4 RIBOSOMAL PROTEIN) protein | Length: 159

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Entity #6 | Chains B

Description: PROTEIN (S5 RIBOSOMAL PROTEIN) protein | Length: 148

No structure alignment results are available for 1EG0.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #7 | Chains C

Description: PROTEIN (S6 RIBOSOMAL PROTEIN) protein | Length: 97

No structure alignment results are available for 1EG0.C explicitly.

It is represented by chain 1CQM.a which has more than 95% sequence identity.

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Entity #8 | Chains D

Description: PROTEIN (S7 RIBOSOMAL PROTEIN) protein | Length: 146

No structure alignment results are available for 1EG0.D explicitly.

It is represented by chain 1RSS.a which is 100% sequence identical.

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Entity #9 | Chains E

Description: PROTEIN (S8 RIBOSOMAL PROTEIN) protein | Length: 138

No structure alignment results are available for 1EG0.E explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

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References