Structural Similarities for the Entities in PDB 1EA4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,D,E,F,G,H,J,K,L

Description: TRANSCRIPTIONAL REPRESSOR COPG protein | Length: 45

No structure alignment results are available for 1EA4.A, 1EA4.B, 1EA4.D, 1EA4.E, 1EA4.F, 1EA4.G, 1EA4.H, 1EA4.J, 1EA4.K, 1EA4.L explicitly.

These chains are represented by chain 2CPG.a which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1EA4.L compares with the representative chain d2cpga_. Select a comparison method:


Entity #2 | Chains U,W,Y

Description: DNA (5'-D(*TP*AP*AP*CP*CP*GP*TP*GP *CP*AP*CP*TP*CP*AP*AP*TP*GP*CP*AP*AP*TP*C)-3') dna | Length: 22

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains V,X,Z

Description: DNA(5'-D(*AP*GP*AP*TP*TP*GP*CP*AP*TP *TP*GP*AP*GP*TP*GP*CP*AP*CP*GP*GP*TP*T)-3') dna | Length: 22

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References