Structural Similarities for the Entities in PDB 1E50

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G,Q,R

Description: CORE-BINDING FACTOR ALPHA SUBUNIT protein | Length: 134

No structure alignment results are available for 1E50.A, 1E50.C, 1E50.E, 1E50.G, 1E50.Q, 1E50.R explicitly.

These chains are represented by chain 1EAQ.a which has more than 95% sequence identity.

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View how chain 1E50.R compares with the representative chain d1eaqa_. Select a comparison method:


Entity #2 | Chains B,D,F,H

Description: CORE-BINDING FACTOR CBF-BETA protein | Length: 134

No structure alignment results are available for 1E50.B, 1E50.D, 1E50.F, 1E50.H explicitly.

These chains are represented by chain 3WTT.B which has more than 95% sequence identity.

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View how chain 1E50.H compares with the representative chain PDP:3WTTBa. Select a comparison method:


References