Structural Similarities for the Entities in PDB 1E08

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: [FE]-HYDROGENASE (LARGE SUBUNIT) protein | Length: 371

No structure alignment results are available for 1E08.A explicitly.

It is represented by chain 1GX7.A which is 100% sequence identical.

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View how chain 1E08.A compares with the representative chain PDP:1GX7Aa. Select a comparison method:


Entity #2 | Chains D

Description: [FE]-HYDROGENASE (SMALL SUBUNIT) protein | Length: 88

No structure alignment results are available for 1E08.D explicitly.

It is represented by chain 1GX7.D which is 100% sequence identical.

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Entity #3 | Chains E

Description: CYTOCHROME C553 protein | Length: 78

No structure alignment results are available for 1E08.E explicitly.

It is represented by chain 1C53.a which has more than 70% sequence identity.

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References