Structural Similarities for the Entities in PDB 1DX5

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: THROMBIN LIGHT CHAIN protein | Length: 36

No structure alignment results are available for 1DX5.A, 1DX5.B, 1DX5.C, 1DX5.D explicitly.

These chains are represented by chain 5AFY.L which is 100% sequence identical.

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View how chain 1DX5.D compares with the representative chain PDP:5AFYL_. Select a comparison method:


Entity #2 | Chains E,F,G,H

Description: THROMBIN INHIBITOR GLU-GLY-ARG-0QE protein | Length: 4

This entity is too short to be considered for the all vs. all structure alignments.


Entity #3 | Chains I,J,K,L

Description: THROMBOMODULIN protein | Length: 118

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Entity #4 | Chains M,N,O,P

Description: THROMBIN HEAVY CHAIN protein | Length: 259

No structure alignment results are available for 1DX5.M, 1DX5.N, 1DX5.O, 1DX5.P explicitly.

These chains are represented by chain 4I8H.A which has more than 40% sequence identity.

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View how chain 1DX5.P compares with the representative chain PDP:4I8HAa. Select a comparison method:


References