Structural Similarities for the Entities in PDB 1DV4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-19-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 16S RIBOSOMAL RNA rna | Length: 362

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains E

Description: RIBOSOMAL PROTEIN S5 protein | Length: 145

No structure alignment results are available for 1DV4.E explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains G

Description: RIBOSOMAL PROTEIN S7 protein | Length: 135

No structure alignment results are available for 1DV4.G explicitly.

It is represented by chain 1RSS.a which is 100% sequence identical.

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References