Structural Similarities for the Entities in PDB 1DM0

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,L

Description: SHIGA TOXIN A SUBUNIT protein | Length: 287

No structure alignment results are available for 1DM0.A, 1DM0.L explicitly.

These chains are represented by chain 4M1U.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1DM0.L compares with the representative chain PDP:4M1UAa. Select a comparison method:


Entity #2 | Chains B,C,D,E,F,G,H,I,J,K

Description: SHIGA TOXIN B SUBUNIT protein | Length: 69

No structure alignment results are available for 1DM0.B, 1DM0.C, 1DM0.D, 1DM0.E, 1DM0.F, 1DM0.G, 1DM0.H, 1DM0.I, 1DM0.J, 1DM0.K explicitly.

These chains are represented by chain 1C4Q.a which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1DM0.K compares with the representative chain d1c4qa_. Select a comparison method:


References